Direct Targeted Methylation Sequencing (gdna)

Native Methylation Meets Targeted Precision

Wasatch BioLabs' Direct Targeted Methylation Sequencing (dTMS) provides a scalable, cost-effective solution for region-specific analysis, ideal for applications where whole-genome sequencing is inefficient or expensive. Combining hybridization-based enrichment with nanopore sequencing, dTMS overcomes the limitations of traditional methods, including short-reads and synthetic DNA that erase native modifications.

dTMS enables the direct targeting of genes, regions, and epigenetic modifications, capturing complex sequences, and native methylation and hydroxymethylation with enhanced sensitivity and specificity.

Advantages

Direct, native detection bypasses the need for bisulfite conversion and PCR amplification, eliminating their associated biases and DNA damage. WBL's sequencing technology enables the analysis of:

  • Copy Number Variants (CNVs, dependent on read length and depth)
  • Modified Bases(5mC, 5hmC; also 6mA for bacteria)
  • Short Tandem Repeat Expansions (STRs, dependent on read length and depth)
  • Phasing Data (dependent on read length and depth)
  • Small Variants (SNPs)
  • Structural Variants

Targeted Bisulfite Sequencing

WBL dTMS (gDNA)

Long Reads

Single Molecule Resolution

Methylation & Hydroxy Methylation

Real-Time Analysis

PCR Bias-Free

Bisulfite Conversion DNA Damage-Free

DNA Sequence

Methylation

Hydroxymethylation

Potential For Additional
Base Modifications

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*Requires Extra Steps

Traditional dTMS   Vs   WBL dTMS

A Technical Comparrison

dTMS leverages proprietary library preparation and hybridization-based enrichment protocols to streamline the targeted acquisition of native sequence and methylation data. WBL’s protocol bypasses the amplification and conversion steps required in traditional methylation analyses, reducing errors and biases in your data.

The Setup Process

More Than a Service Provider —Your Trusted Partner

From exploratory research to targeted analyses, Wasatch BioLabs empowers precision analysis with unbiased sequencing solutions. Leveraging proprietary technologies like dTMS, tailored workflows, and expert bioinformatics support, we deliver actionable insights to advance your research.

Proprietary, Flexible Solutions

[Service]

Harness advanced tools like dTMS to target genes, complex variants, and epigenetic modifications. Our workflows scale from exploration to clinical applications.

Bioinformatic Expertise

[Service]

Enhance your data with custom bioinformatics solutions, using tailored workflows and advanced analysis to generate impactful, publication-ready insights.

One-On-One Collaboration

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Collaborate with sequencing and bioinformatics experts who provide personalized guidance, ensuring your project moves smoothly from biomarker discovery to targeted analysis.

Specialized offerings in our next-generation Biolab

Explore our other DNA Service

FAQ

How does Wasatch BioLabs’ targeted sequencing improve detection of specific methylation sites?

Wasatch BioLabs’ Direct Targeted Methylation Sequencing (dTMS) uses hybridization-based enrichment combined with native nanopore sequencing. This allows for high-precision targeting of specific genomic & epigenomic regions and direct detection of methylation and hydroxymethylation, bypassing bisulfite conversion and PCR. As a result, it enhances sensitivity and specificity for pinpointing methylation patterns.

What advantages does targeted DNA methylation sequencing offer for focused research or clinical studies?

WBL's targeted native-read sequencing assay offers a cost-effective, high-throughput method unavailable anywhere else. It’s especially useful when your use case only requires targeting specific genes or regions are of interest. By preserving native DNA modifications and eliminating amplification bias, this approach provides accurate and reliable data for biomarker discovery, clinical assay development, and epigenetic studies.

How customizable are the targeted regions for methylation sequencing at Wasatch BioLabs?

They are highly customizable as  researchers can define their regions of interest, and Wasatch BioLabs designs a corresponding probe set tailored to those targets. The dTMS workflow adapts to the unique goals of your study, reagardless of whether focusing on specific genes, regulatory elements, or CpG islands.

What sample types are compatible with targeted methylation sequencing?

Direct Targeted Methylation Sequencing is optimized for high-quality genomic DNA (gDNA) samples. The process is particularly effective when intact DNA is available, enabling accurate analysis of sequence and methylation information without the degradation risks associated with harsh treatments like bisulfite conversion.

How does Wasatch BioLabs ensure accuracy and specificity in targeted methylation sequencing?

We make sure that accuracy is maintained through a combination of proprietary library prep, hybrid capture protocols, and long-read native nanopore sequencing. This method avoids common sources of bias, such as PCR amplification or chemical conversion, and delivers single-molecule resolution data — ensuring precise and reproducible results.

What kind of data output and reporting does Wasatch BioLabs provide for targeted methylation sequencing?

Clients receive detailed sequence and methylation data, including information on 5mC and 5hmC levels, phasing, structural variants, and small variant calls. Data access and visualization tools are also provided, and comprehensive bioinformatics support helps translate raw data into actionable insights.

How does Wasatch BioLabs support clients in designing custom targeted methylation panels?

From the start, Wasatch BioLabs works closely with clients to identify target regions and design custom probe sets. The team offers end-to-end support, from experimental planning to final analysis, ensuring that each targeted panel aligns with the research or clinical objectives.